Downloads

Popular Downloads

𝔾TEx V8 expression and splicing predictors […] PsychENCODE expression predictors […] BrainXcan brain features predictors Read more →

GTEx v8 models on eQTL and sQTL

2021-07-21 PredictDB Team
𝕎e have produced different families of prediction models for sQTL and eQTL, using several prediction strategies, on GTEx v8 release data. We recommend MASHR-based models below. Elastic Net-based are a safe, robust alternative with decreased power. […] Expression and splicing prediction models … Read more →

PsychENCODE Brain Expression Models

2020-07-19 Sabrina Mi, Michael Gandal
𝔾andal et al analyzed autism spectrum disorder, schizophrenia, and bipolar disorder across multiple levels of transcriptomic organization—gene expression, local splicing, transcript isoform expression, and coexpression networks for both protein-coding and noncoding genes to produce a quantitative, … Read more →

EpiXcan Models - Integrated Epigenetics

2019-08-23 PredictDB Team
𝔼xpression prediction models with LD reference data are available in this website. The models were trained on Common Mind Consortium, GTEx, and STARNET consortiums. The underlying algorithm is Elastic Net, informed by epigenetic data. These models were presented in “Integrative transcriptome … Read more →

CommonMind consortium - Brain Dorsolateral Prefrontal Cortex

2019-07-21 PredictDB Team
𝕊ingle-tissue expression prediction models with LD reference data are available in this GitHub repository. The underlying algorithm is Elastic Net. These models were presented in “Gene expression imputation across multiple brain regions provides insights into schizophrenia risk, Huckins et al, … Read more →

MESA models - non European

2018-07-21 PredictDB Team
𝕊ingle-tissue expression prediction models with LD reference data are available in this Zenodo repository. The underlying algorithm is Elastic Net on MESA multi-ethnic cohort. These models were presented in “Genetic architecture of gene expression traits across diverse populations”, … Read more →

GTEx v7 Expression models

2017-11-29 PredictDB Team
𝔼xpression prediction models with LD reference data ar available in this Zenodo repository. The underlying algorithm is Elastic Net. […] Additional support information and details are available in the Zenodo repository. You can find release notes in this link. Acknowledging these models: If … Read more →

GTEx v6 Expression models

2016-11-16 PredictDB Team
𝔼xpression prediction models with LD reference data are available in this Zenodo repository. […] Additional support information and details are available in the Zenodo repository. Please check this link, about the GTEx v7 models, for a few caveats found in GTEx v6 models. Acknowledging these … Read more →